IIT Madras

PDA-Pred

Protein-DNA complex Binding Affinity Prediction
Protein Bioinformatics Lab

Training data

S.NoPDBStructural classFunctional classExperimental ΔG
11aayAlpha BetaRegulatory-11.8
21aisAlpha BetaRegulatory-8.72
31az0Alpha BetaNot-regulatory-17.43
41azpAll BetaNot-regulatory-8.22
51b3tAlpha BetaRegulatory-8.31
61b72All AlphaRegulatory-7.31
71bdiAll AlphaRegulatory-11.73
81bdtAll AlphaRegulatory-9.63
91bf5All AlphaRegulatory-9.8
101bhmAlpha BetaNot-regulatory-12.16
111bnzAll BetaNot-regulatory-7.65
121buaAlpha BetaNot-regulatory-13.85
131by4Alpha BetaRegulatory-8.77
141ckqAlpha BetaNot-regulatory-15.71
151cktAll AlphaRegulatory-8.79
161cmaAll AlphaRegulatory-7.97
171e7jAll AlphaNot-regulatory-8.32
181ebmAlpha BetaNot-regulatory-10.25
191ecrAlpha BetaRegulatory-9.16
201emhAlpha BetaNot-regulatory-6.88
211eygAll BetaRegulatory-10.9
221g9zAlpha BetaNot-regulatory-13.76
231gccAlpha BetaNot-regulatory-13.33
241gluAlpha BetaRegulatory-8.17
251h8aAll AlphaRegulatory-10.93
261h9tAll AlphaRegulatory-12.98
271hcqAlpha BetaRegulatory-9.49
281hcrAll AlphaNot-regulatory-10.58
291hjbAll AlphaRegulatory-10.15
301hryAll AlphaNot-regulatory-14.65
311hvnothersNot-regulatory-7.35
321i8mAll BetaNot-regulatory-7.59
331ig4Alpha BetaNot-regulatory-10.22
341ignAll AlphaRegulatory-14.84
351ihfothersRegulatory-7.7
361ijwAll AlphaNot-regulatory-11.4
371imhAll BetaRegulatory-10.26
381j5nAll AlphaNot-regulatory-10.95
391jeyAlpha BetaNot-regulatory-12.03
401jj4Alpha BetaRegulatory-11.99
411jmcAll BetaRegulatory-9.69
421lauAlpha BetaNot-regulatory-6.94
431lbgAlpha BetaRegulatory-9.45
441leiAll BetaRegulatory-12.81
451lmbAll AlphaRegulatory-8.97
461mdmAll AlphaRegulatory-14.94
471mhdAlpha BetaRegulatory-9.47
481mhtAlpha BetaNot-regulatory-12.94
491mseAll AlphaNot-regulatory-11.29
501nh2Alpha BetaRegulatory-10.85
511noyAlpha BetaNot-regulatory-10.78
521otcAll BetaNot-regulatory-9.44
531owgothersRegulatory-9.13
541owrAll BetaRegulatory-11.68
551p47Alpha BetaRegulatory-20.01
561p51othersNot-regulatory-10.34
571pnrAll AlphaRegulatory-11.48
581po6Alpha BetaNot-regulatory-9.28
591pp8All AlphaRegulatory-9.16
601pueAll AlphaRegulatory-9.23
611pufAll AlphaRegulatory-9.05
621pviAlpha BetaNot-regulatory-9.22
631qbjAll AlphaNot-regulatory-9.18
641qp0All AlphaRegulatory-10.17
651qp4All AlphaRegulatory-10.91
661qrvAll AlphaRegulatory-5.83
671qzgAll BetaNot-regulatory-8.62
681r8dAll AlphaRegulatory-9.57
691r8eAlpha BetaRegulatory-11.75
701rpeAll AlphaRegulatory-13.56
711runAll BetaRegulatory-14.39
721s40All BetaNot-regulatory-12.91
731sfuAll AlphaNot-regulatory-9.63
741skrAlpha BetaNot-regulatory-10.62
751t2tAlpha BetaNot-regulatory-11.28
761tauAlpha BetaNot-regulatory-10.55
771tc3All AlphaNot-regulatory-9.31
781tdzAlpha BetaNot-regulatory-11.62
791troAll AlphaRegulatory-13.31
801tsrAll BetaRegulatory-11.87
811tw8Alpha BetaNot-regulatory-8.83
821u1kAlpha BetaNot-regulatory-8.86
831u1nAlpha BetaNot-regulatory-8.86
841u1oAlpha BetaNot-regulatory-9.86
851u1pAlpha BetaNot-regulatory-9.11
861u1qAlpha BetaNot-regulatory-9.71
871vfcAll AlphaNot-regulatory-8.35
881w36Alpha BetaNot-regulatory-9.04
891w7aAlpha BetaRegulatory-6.99
901xjvAll BetaNot-regulatory-10.96
911ysaAlpha BetaRegulatory-9.51
921ytbAlpha BetaRegulatory-12.15
931z63Alpha BetaNot-regulatory-9.45
941zjmAll AlphaNot-regulatory-10.71
951zq3All AlphaRegulatory-12.77
961zziAlpha BetaNot-regulatory-7.89
972a66Alpha BetaRegulatory-9.33
982b0dAlpha BetaNot-regulatory-8.16
992bopAlpha BetaRegulatory-9.26
1002bpfAll AlphaNot-regulatory-5.74
1012ezdAlpha BetaNot-regulatory-7.01
1022fr4All BetaNot-regulatory-7.98
1032g1pAlpha BetaNot-regulatory-9.5
1042gatAlpha BetaNot-regulatory-11.99
1052ge5Alpha BetaNot-regulatory-8.66
1062gzkAll AlphaNot-regulatory-9.35
1072h1kAll AlphaRegulatory-12.16
1082haxAll BetaRegulatory-10.09
1092hhuAlpha BetaNot-regulatory-4.03
1102hvhAlpha BetaNot-regulatory-6.47
1112isoAll AlphaNot-regulatory-7.5
1122iszAll AlphaRegulatory-7.32
1132jxiAll AlphaNot-regulatory-8.76
1142kaeAlpha BetaRegulatory-11.04
1152kdzAll AlphaRegulatory-12.14
1162kkfothersNot-regulatory-5.94
1172kmkothersRegulatory-13.07
1182ky8Alpha BetaRegulatory-7.74
1192l4lothersNot-regulatory-7.77
1202levothersRegulatory-8.12
1212lkxAll AlphaRegulatory-10.65
1222lttAll BetaNot-regulatory-10.63
1232moeAlpha BetaNot-regulatory-7.08
1242mruAll BetaRegulatory-7.16
1252n8aAlpha BetaNot-regulatory-9.58
1262ntcAlpha BetaNot-regulatory-8.35
1272o8kAll AlphaRegulatory-9.47
1282oxvAlpha BetaNot-regulatory-13.48
1292p7cAll AlphaRegulatory-13.86
1302pi5All AlphaNot-regulatory-8.45
1312q2kothersNot-regulatory-10.58
1322r5zAll AlphaRegulatory-11.0
1332rbfAll AlphaNot-regulatory-9.11
1342vlaAll AlphaNot-regulatory-11.09
1352vs7Alpha BetaNot-regulatory-9.49
1362vyeothersNot-regulatory-9.83
1372w42Alpha BetaNot-regulatory-10.1
1382w8kAlpha BetaNot-regulatory-6.19
1392x6vAll BetaRegulatory-9.49
1402ypfAlpha BetaRegulatory-9.62
1413aafAll AlphaNot-regulatory-9.0
1423bepAlpha BetaNot-regulatory-9.34
1433brdAll BetaRegulatory-10.22
1443brfAll BetaRegulatory-7.76
1453brgAll BetaRegulatory-5.76
1463bs1All BetaRegulatory-9.68
1473coqothersRegulatory-10.38
1483croAll AlphaRegulatory-9.13
1493cvvAlpha BetaNot-regulatory-6.91
1503d2wAlpha BetaRegulatory-9.35
1513eyiAll AlphaRegulatory-8.6
1523fd2Alpha BetaNot-regulatory-10.25
1533fylAlpha BetaRegulatory-8.88
1543g6pAlpha BetaRegulatory-8.52
1553g8uAlpha BetaRegulatory-8.11
1563g99Alpha BetaRegulatory-9.51
1573g9mAlpha BetaRegulatory-9.15
1583gfiAll AlphaRegulatory-8.82
1593glfAlpha BetaNot-regulatory-6.47
1603gliAlpha BetaNot-regulatory-8.75
1613gqcAlpha BetaNot-regulatory-10.73
1623gutAll BetaRegulatory-12.03
1633gx4All AlphaRegulatory-12.89
1643gxqAll AlphaRegulatory-9.4
1653h0dAlpha BetaRegulatory-10.61
1663h15All BetaRegulatory-7.46
1673hddAll AlphaRegulatory-10.86
1683imbAlpha BetaNot-regulatory-12.68
1693iv5All AlphaRegulatory-13.23
1703kxtAll BetaNot-regulatory-7.04
1713l2cAll AlphaRegulatory-8.71
1723lwhAll BetaNot-regulatory-7.76
1733mfkAll AlphaRegulatory-9.84
1743mkwAll AlphaNot-regulatory-10.81
1753mq6Alpha BetaNot-regulatory-12.57
1763o9xAlpha BetaRegulatory-12.4
1773od8Alpha BetaNot-regulatory-7.78
1783odeAlpha BetaNot-regulatory-10.22
1793odhAlpha BetaNot-regulatory-10.76
1803on0All AlphaRegulatory-11.34
1813oolAlpha BetaNot-regulatory-10.46
1823oqmAll AlphaNot-regulatory-11.99
1833oqnAll AlphaNot-regulatory-7.53
1843osfAll AlphaRegulatory-10.21
1853osgAll AlphaRegulatory-9.49
1863pihAlpha BetaNot-regulatory-11.89
1873povAll AlphaNot-regulatory-7.12
1883pvpAll AlphaRegulatory-9.85
1893pvvAll AlphaRegulatory-9.0
1903q0bAll BetaNot-regulatory-8.14
1913q0dAll BetaNot-regulatory-7.23
1923q0fAll BetaNot-regulatory-6.9
1933qfqAlpha BetaRegulatory-8.92
1943qymAll BetaRegulatory-6.72
1953r8fAlpha BetaRegulatory-9.49
1963rn2All BetaRegulatory-9.06
1973rnuAll BetaRegulatory-7.93
1983thwAlpha BetaRegulatory-14.05
1993thxAlpha BetaRegulatory-13.85
2003thzAlpha BetaRegulatory-13.64
2013tmmAll AlphaRegulatory-11.21
2023ufdAll AlphaRegulatory-12.56
2033vxvAlpha BetaNot-regulatory-9.55
2043vxxAlpha BetaNot-regulatory-9.56
2053vybAlpha BetaNot-regulatory-9.26
2063wpcAlpha BetaRegulatory-10.5
2073wpdAlpha BetaRegulatory-8.54
2083zdaAlpha BetaNot-regulatory-8.31
2093zh2Alpha BetaNot-regulatory-10.06
2103zi5All BetaNot-regulatory-11.86
2113zkcAll AlphaRegulatory-4.7
2123zplAll AlphaRegulatory-11.56
2134a15Alpha BetaNot-regulatory-9.84
2144a75All BetaRegulatory-9.08
2154a76All BetaRegulatory-9.69
2164aquAlpha BetaNot-regulatory-11.73
2174atiothersRegulatory-11.73
2184atkothersRegulatory-11.96
2194b20Alpha BetaNot-regulatory-9.49
2204b5fAlpha BetaNot-regulatory-9.05
2214bncAll AlphaRegulatory-13.05
2224bqaAll AlphaRegulatory-12.98
2234c2tAlpha BetaNot-regulatory-8.79
2244ch1Alpha BetaRegulatory-9.52
2254cjaAlpha BetaRegulatory-10.37
2264cn2Alpha BetaRegulatory-10.12
2274cn3Alpha BetaRegulatory-10.03
2284cn5Alpha BetaRegulatory-10.09
2294cn7Alpha BetaRegulatory-9.29
2304dtmAlpha BetaNot-regulatory-3.87
2314du1Alpha BetaNot-regulatory-10.15
2324du3Alpha BetaNot-regulatory-8.42
2334egyAll AlphaRegulatory-9.0
2344ejyAlpha BetaNot-regulatory-12.36
2354eotAll AlphaRegulatory-12.73
2364f2jAlpha BetaRegulatory-10.37
2374f6nAlpha BetaRegulatory-13.26
2384fb3Alpha BetaNot-regulatory-10.12
2394fgnAlpha BetaNot-regulatory-10.79
2404fthAll AlphaRegulatory-9.13
2414g92othersRegulatory-11.56
2424gckAll AlphaRegulatory-9.92
2434gclAll AlphaRegulatory-9.28
2444gznAlpha BetaRegulatory-9.68
2454h10othersNot-regulatory-7.93
2464hn5Alpha BetaRegulatory-8.68
2474hp1Alpha BetaRegulatory-7.03
2484hp3Alpha BetaRegulatory-7.77
2494hqbAlpha BetaRegulatory-7.42
2504iqrAlpha BetaRegulatory-9.6
2514j1jAll AlphaNot-regulatory-8.44
2524kb1Alpha BetaNot-regulatory-9.26
2534kmfAll AlphaNot-regulatory-8.28
2544l0yAll BetaRegulatory-11.6
2554ljrAlpha BetaNot-regulatory-10.23
2564lllAll AlphaRegulatory-10.36
2574m8bAlpha BetaRegulatory-11.81
2584m9eothersRegulatory-9.97
2594ni7All AlphaRegulatory-13.23
2604nnuAll AlphaRegulatory-11.09
2614nodAll AlphaRegulatory-11.11
2624o3mAlpha BetaNot-regulatory-10.76
2634owxAll BetaRegulatory-6.94
2644pu3All AlphaNot-regulatory-11.26
2654pxiAll AlphaRegulatory-9.13
2664pziAlpha BetaNot-regulatory-7.19
2674qjuothersNot-regulatory-8.77
2684qlcAll AlphaNot-regulatory-8.8
2694qpqAll AlphaRegulatory-9.13
2704r22All AlphaRegulatory-10.82
2714r56All BetaNot-regulatory-9.37
2724rboAll AlphaRegulatory-7.13
2734s0nAlpha BetaNot-regulatory-10.75
2744tmuAlpha BetaNot-regulatory-12.03
2754ux5Alpha BetaRegulatory-8.31
2764wcgAll AlphaNot-regulatory-8.55
2774x23All AlphaNot-regulatory-9.54
2784x9jAlpha BetaRegulatory-10.73
2794xr0Alpha BetaRegulatory-12.97
2804y5wAlpha BetaNot-regulatory-10.37
2814y60All AlphaRegulatory-11.2
2824yg4All AlphaRegulatory-9.96
2834ygiAll BetaNot-regulatory-7.94
2844zpkAlpha BetaRegulatory-10.02
2854zsfothersNot-regulatory-11.64
2865a77Alpha BetaNot-regulatory-9.72
2875cbxAlpha BetaRegulatory-9.49
2885cbyAlpha BetaRegulatory-9.44
2895cbzAlpha BetaRegulatory-9.51
2905cc0Alpha BetaRegulatory-8.77
2915co8othersNot-regulatory-10.88
2925d4rAll AlphaRegulatory-9.01
2935d4sAll AlphaRegulatory-8.94
2945d8cAll AlphaRegulatory-10.36
2955d9yAlpha BetaNot-regulatory-8.24
2965deuAlpha BetaNot-regulatory-8.12
2975dffAlpha BetaNot-regulatory-11.49
2985dwbAlpha BetaNot-regulatory-12.33
2995e24;All BetaNot-regulatory-11.86
3005e5oAlpha BetaNot-regulatory-9.3
3015e69;Alpha BetaNot-regulatory-6.5
3025e6aAlpha BetaRegulatory-5.86
3035e6cAlpha BetaRegulatory-7.355
3045e8iAll AlphaRegulatory-10.52
3055ed4Alpha BetaNot-regulatory-10.52
3065ednAll AlphaRegulatory-10.0
3075eeaAll AlphaRegulatory-10.07
3085egbothersNot-regulatory-10.18
3095eh2othersNot-regulatory-10.3
3105ei9othersNot-regulatory-10.15
3115exhAlpha BetaNot-regulatory-7.16
3125eyoothersRegulatory-10.24
3135fd3Alpha BetaRegulatory-7.58
3145gatAlpha BetaNot-regulatory-10.38
3155gkrAll BetaNot-regulatory-11.37
3165gnjAlpha BetaRegulatory-8.17
3175gpcAll AlphaRegulatory-9.54
3185gzbAll AlphaRegulatory-9.05
3195hrlAlpha BetaNot-regulatory-8.77
3205hrtothersNot-regulatory-12.12
3215i44All AlphaNot-regulatory-6.87
3225ithAlpha BetaRegulatory-10.26
3235iudAlpha BetaNot-regulatory-8.62
3245jh0Alpha BetaNot-regulatory-9.59
3255jk0othersNot-regulatory-9.46
3265k07All BetaNot-regulatory-6.12
3275k17All BetaNot-regulatory-6.89
3285k5hothersRegulatory-8.89
3295k83Alpha BetaNot-regulatory-7.91
3305ke6othersRegulatory-9.07
3315kkqothersRegulatory-10.97
3325l0mAlpha BetaRegulatory-9.85
3335meyAlpha BetaRegulatory-9.11
3345mezAlpha BetaRegulatory-8.85
3355mhkAll AlphaRegulatory-11.99
3365sy7Alpha BetaRegulatory-10.58
3375t1jAll BetaRegulatory-10.53
3385u1jAlpha BetaNot-regulatory-9.46
3395uanAlpha BetaRegulatory-10.37
3405uc6All BetaRegulatory-11.09
3415v0lothersRegulatory-11.34
3425v0qAlpha BetaNot-regulatory-13.36
3435va0Alpha BetaRegulatory-8.72
3445va7Alpha BetaRegulatory-10.8
3455vfxAlpha BetaRegulatory-8.42
3465vmuAlpha BetaNot-regulatory-13.23
3475vmvAlpha BetaNot-regulatory-12.77
3485w34Alpha BetaNot-regulatory-8.51
3495x07All AlphaRegulatory-9.22
3505x11All AlphaRegulatory-11.02
3515x5lAlpha BetaRegulatory-7.71
3525yejAlpha BetaRegulatory-10.72
3535yi2All AlphaRegulatory-10.73
3545yj3othersNot-regulatory-9.08
3555yzzAll BetaRegulatory-7.11
3565z2tAll AlphaRegulatory-7.01
3575z6zAlpha BetaRegulatory-10.02
3585zmoothersNot-regulatory-7.96
3595zvaAlpha BetaNot-regulatory-5.81
3605zvbAlpha BetaNot-regulatory-5.99
3616a2hAll BetaNot-regulatory-8.83
3626a2iAll BetaNot-regulatory-8.7
3636akoAll AlphaRegulatory-8.32
3646akpAll AlphaRegulatory-5.34
3656asbAlpha BetaRegulatory-7.32
3666asdAlpha BetaNot-regulatory-7.51
3676b0oothersRegulatory-10.26
3686buxAlpha BetaNot-regulatory-5.81
3696c1aAlpha BetaRegulatory-7.01
3706c1vAlpha BetaRegulatory-6.66
3716c31All AlphaRegulatory-8.79
3726cnpAlpha BetaRegulatory-8.39
3736cnqAlpha BetaRegulatory-8.24
3746crmAlpha BetaNot-regulatory-7.26
3756e93;Alpha BetaNot-regulatory-11.32
3766eo7All BetaNot-regulatory-11.66
3776es2All AlphaRegulatory-9.52
3786es3All AlphaRegulatory-10.23
3796fwrothersNot-regulatory-8.87
3806h8qAlpha BetaNot-regulatory-7.71
3816jnlothersNot-regulatory-9.73
3826jnmothersNot-regulatory-9.49
3836kbsAlpha BetaNot-regulatory-7.71
3846ki6othersRegulatory-9.74
3856kksAll AlphaRegulatory-9.94
3866mhtAlpha BetaNot-regulatory-10.47
3876r64Alpha BetaNot-regulatory-11.81
3886u7tAlpha BetaNot-regulatory-12.68
3896z8vAlpha BetaNot-regulatory-10.82
3906z8xAlpha BetaNot-regulatory-10.86
3917icrAll AlphaNot-regulatory-10.81
*Dataset used for training the model.