ENTRY 385

RNA Information

RNA nameAptamer
RNA target IDTarget_6
Source organismSynthetic
Disease involved-
RNA sequenceGGGAAGGGAAGAAACUGCGGCUUCGGCCGGCUUCCC
RNA typeRNA aptamer
RNA subclass-
Target region-
Secondary structure

Small Molecule Information

Molecule nameMalachite green
Molecule IDTarget_lig_308
SMILESCN(C)C1=CC=C(C=C1)C(=C2C=CC(=[N+](C)C)C=C2)C3=CC=CC=C3.[Cl-]
IUPAC name[4-[[4-(dimethylamino)phenyl]-phenylmethylidene]cyclohexa-2,5-dien-1-ylidene]-dimethylazanium;chloride
PubChem CID11294
2D structure
Radar Plot

Interaction Information

Ka (M-1)-
Ki (M)-
Kd (M)5E-08
IC50 (M)-
EC50 (M)-

3D structure (Experimental)

Experimental conditions

Experimental method-
RNA concentration-
Small molecule concentration-
pH-
Temperature (°C)-
Ions present-

Literature Information

Reference-
Title-
Authors-
Journal-
Volume-
Pages-
Year-


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The database is maintained by Protein Bioinformatics Lab

Department of Biotechnology, Indian Institute of Technology Madras