GLOSSARY

  • ASA
    • Accessible surface area for the residue in complex, unbound and difference between them are given.
  • Authors
    • Authors contributed for binding affinity experiment of protein-carbohydrate interaction collected from the literature.
  • DeltaG (ΔG)
    • Free energy values can be used to search protein-carbohydrate interaction. Range of values are expected to get results.
    • Values were converted to unique format.
  • DDG (ΔΔG)
    • Free energy values between mutant and wildtype can be used to search protein-carbohydrate interaction. Range of values are expected to get results.
    • Values were converted to unique format.
  • Entry ID
    • Entry ID is assigned by year of publication in ascending order. User can use these ID report to database administrator if any error found.
  • Experimental
    • Experimental details are given to the user like pH, buffer, temperature and method used.
  • KD
    • User can search by the dissociation constant of the protein-carbohydrate interaction. Range of values are expected to get results.
    • Values were converted to unique format.
  • Keywords
    • It is useful to search by any keyword(s) like protein, sugar, source, values, pubmed , PDB ID, UniProt ID, year and authors.
  • Mutation
    • User can search for mutations by using 2 drop-down boxes available in search page.
    • E.g. If user wants to search mutation E62A, then user can select Glu (E) from first drop-down and Ala (A) from second drop-down.
  • PDB ID
    • Structure link is given to the PDB if structure is available.
  • Protein
    • Protein names are given as mentioned in the literature and further details can be obtained from the literature about the protein.
  • References
    • Gives the details about literature like authors, year, journal , volume, issue, page numbers and Pubmed ID.
  • Secondary Structure
    • Secondary structure of wildtype residue is given for mutation data alone (Helix, Strand, Turn and Coil).
  • Source
    • Source is an organism where protein is present or isolated for an experiment.
  • Sugar
    • Sugars are carbohydrates which are interacting with the protein. Sugars are denoted in the same way as mentioned in the literature.
  • Wild-type
    • Wild-type denotes the protein is wild-type and its not does not have any mutations in it.
  • Year
    • Publication year of the literature.