IIT Madras

PRA-MutPred

Protein-RNA complex Binding Affinity change Prediction

Tutorial


The predict page can be accessed from here.

This page takes input of protein-RNA complex and mutation to predict the binding affinity change upon mutation.

Input options:

  1. The page has option to enter PDB ID of protein-RNA complex or user can upload their file in PDB format. *
  2. User has option to enter the Mutation. Use the format 'chain:wt:position:mutation'.(For eg. A:F51A
    if mutation has to be made in multiple chains at once then use as A-B:H49D). (Eg. Chain ID: A,B)
  3. User can also upload the file containing different mutations in the described format (Optional)
* Mandatory fields.

Example 1: Input:

PDB ID: 1jbr Mutation: D40A, F51A in chain A

Example 1 1jbr

Result for example 1:

Example 1 1jbr

Example 2: Input:

PDB ID: 2err, Mutation: F150A in chain A

Example 2 2err

Result for example 2:

Example 2 2err

Example 3:

Input: PDB: 4cio,Mutation: K104M in chain A

.

Example 3 4cio

Result for example 3:

Example 3 4cio